Software
All of the listed tools are related to do statistical-genetics analysis to assist geneticists and/or breeders.
R packages:
AGHmatrix, author, compute relationship matrices for diploid and autopolyploid species
diaQTL, co-author, QTL mapping in multiparent and autopolyploid populations
diaQTLSimulate, author, wrapper to simulate populations of classic breeding mating designs
fullsibQTL, co-author, QTL mapping in outcrossing species using composite interval mapping
onemap, contributor, build genetic maps in bi-parental experimental crosses
onemap2pop, author, onemap extension to build multi-family genetic maps in outcrossing species
Apps:
Plot Genealogy, author, app to easy plot genealogy (pedigree) of a given genotype based on a given pedigree file