Software

All of the listed tools are related to do statistical-genetics analysis to assist geneticists and/or breeders.

R packages:

AGHmatrix, author, compute relationship matrices for diploid and autopolyploid species

diaQTL, co-author, QTL mapping in multiparent and autopolyploid populations

diaQTLSimulate, author, wrapper to simulate populations of classic breeding mating designs

fullsibQTL, co-author, QTL mapping in outcrossing species using composite interval mapping

onemap, contributor, build genetic maps in bi-parental experimental crosses

onemap2pop, author, onemap extension to build multi-family genetic maps in outcrossing species

Apps:

Plot Genealogy, author, app to easy plot genealogy (pedigree) of a given genotype based on a given pedigree file